Z. Lange, F. Matthäus, M. Qiu, Vertex models capturing subcellular scales in epithelial tissues, PLoS Comp Biol. 21(5):e1012993, 2025.

M. Pereyra, M. Golden, Z. Lange, A. Golden, F. Strobl, E.H.K. Stelzer, F. Matthäus,  Spatiotemporal segmentation of contraction waves in the extra-embryonic membranes of the red flour beetle, bioRxiv 2024.08.23.609389;   https://doi.org/10.1101/2024.08.23.609389, 2024.

C. Fraga Delfino Kunz, A Gerisch, J. Glover, D. Headon, K. Painter,  F. Matthäus, Novel aspects in pattern formation arise from coupling Turing reaction-diffusion and chemotaxis, Bull. Math. Biol. 86 (4), 2024. https://doi.org/10.1007/s11538-023-01225-5

T. Liebisch, M. Basoglu, S. Jäger, C. Büchel, Influence of reduced amounts of sulfoquinovosyl diacylglycerol on the thylakoid membranes of the diatom Thalassiosira pseudonana, Photosynthetica, 2023.  https://doi.org/10.32615/ps.2023.032, 2023 

M. Pereyra, A. Drusko, F. Strobl, F. Krämer, E. Stelzer, F. Matthäus, QuickPIV: Efficient 3D particle image velocimetry software applied to quantifying cellular migration during embryogenesis, BMC Bioinformatics 22: Art. no. 579, 2021. [LINK]

J. M. R. de Souza, T. Y. Miyaoka, C. F. D. Kunz, J. F. C. A. Meyer, COVID-19 - Modeling and Parameter Estimation for Brazil and Portugal: How predictable is the future? Trends in Computational and Applied Mathematics 22(4):575-594, 2021. [LINK]

J. F. C. A. Meyer, M. Lima, C. C. Espitia, F. Longo, B. Laiate, A. N. Gois, C. F. D. Kunz, Different Approaches to the Modelling of COVID-19, Trends in Computational and Applied Mathematics 22(4):515-531, 2021. [LINK]

L. Hof, T. Moreth, M. Koch, T. Liebisch, M. Kurtz, J. Tarnick, S.M. Lissek, M.M.A. Verstegen, L.J.W. van der Laan, M. Huch, F. Matthäus, E.H.K. Stelzer, F. Pampaloni, Long-term live imaging  and multiscale analysis identify heterogeneity and core principles of epithelial organoid morphogenesis, BMC Biology 19(37), 2021. [LINK]

T. Liebisch, A. Drusko, B. Mathew, E. H. K. Stelzer, S. C. Fischer, F. Matthäus, Cell fate clusters in ICM organoids arise from cell fate heredity & division – a modelling approach, Sci. Rep. 10:22405, 2020. [LINK]

J. Tetteh, F. Matthäus, E.A. Hernandez-Vargas, A survey of within-host and between-hosts modelling for antibiotic resistance, Biosystems, DOI: 10.1016/j.biosystems.2020.104182, 2020. [LINK]

K.H. Kopfer, W. Jäger, F. Matthäus, A mechanochemical model for Rho GTPase mediated cell polarization, J. Theor. Biol., https://doi.org/10.1016/j.jtbi.2020.110386, 2020. [LINK]

W.K.W. Ho, L. Freem, D. Zhao, M.J. McGrew, K.J. Painter, T. Woolley, E. A. Gaffney, A. Tzika, M. Milinkovitch, P. Schneider, A. Drusko, F. Matthäus, J.L. Glover, H.M. Sang, M.G. Davey, K.L. Wells, J.A. Johansson, M. Clinton, D.J. Headon, Interacting signalling and cellular waves pattern the feather array, PLoS biology 17 (2), e3000132, 2019. [LINK]

Tamara García-Salum, Andrea Villablanca, Franziska Matthäus, Andrés Tittarelli, Mauricio Baeza, Cristián Pereda, M. Alejandra Gleisner, Fermín E. González, Mercedes N. López, Jörg D. Hoheisel, Johannes Norgauer, Peter Gebicke-Haerter and Flavio Salazar-Onfray, Molecular Signatures Associated with Prolonged Survival In Melanoma Patients Treated with Dendritic Cell-Based Immunotherapy, Oncotarget 9: 17014-17027, 2018. [LINK]

Anja Seybert*, Luis Gonzalez-Gonzalez*, Margot P. Scheffer, Maria Lluch-Senar, Ana M. Mariscal, Enrique Querol, Franziska Matthäus, Jaume Piñol, Achilleas S. Frangakis, Cryo-electron tomography analyses of terminal organelle mutants reveal the motility mechanism of Mycoplasma genitalium, Mol. Microbiol., doi: 10.111/mmi.13938, 2018. [LINK]

M. Gonzalez-Vallinas, M. Rodriguez-Paredes, M. Albrecht, C. Sticht, D. Stichel, J. Gutekunst, A. Pitea, S. Sass, F. Sánchez-Rivera, J. Bermejo, J. Schmitt, C. De La Torre, A. Warth, F. Theis, N. Müller, N. Gretz, T. Muley, M. Meister, D. Tschaharganeh, P. Schirmacher, F. Matthäus, K. Breuhahn, Epigenetically regulated microRNA cluster on chromosome 14q32 induces metastasis and predicts poor prognosis in lung adenocarcinoma patients, Molecular Cancer Research 16(3):390-402, 2018. [LINK]

 J.D. Glover, K.L. Wells, F. Matthäus, K.J. Painter, W. Ho, J. Riddell, J.A. Johansson, M. Ford, C.A.B. Jahoda, V. Klika, R.L. Mort, and D.J. Headon, Hierarchical patterning modes orchestrate hair follicle morphogenesis, PLoS Biology 15(7):e2002117, 2017. [LINK]

D. Stichel, A.M. Middleton, B.F. Müller, S. Depner, U. Klingmüller, K. Breuhahn, F. Matthäus, An individual-based model for the collective cancer cell migration explains speed dynamics and phenotype variability in response to growth factors, NPJ Systems Biology and Applications 3, Art. no. 5,  DOI:10.1038/s41540-017-0006-3, 2017. [LINK]

M. Albrecht, D. Stichel, B.F. Müller, R. Merkle, C. Sticht, N. Gretz, U. Klingmüller, K. Breuhahn, F. Matthäus, TCCA: An R package for the identification of differentially expressed genes in time course microarray data, BMC Bioinformatics 18:33, 2017. [LINK]

B. Müller*, M. Bovet*, Y. Yin*, D. Stichel*, M. Malz, A.M. Middleton, V. Ehemann, J. Schmitt, T. Muley, M. Meister, E. Herpel, S. Singer, A. Warth, P. Schirmacher, D. Drasdo^$, F. Matthäus^$, K. Breuhahn^$, Concomitant expression of far upstream element (FUSE) binding protein (FBP) interacting repressor (FIR) and its splice variants induce migration and invasion of non-small cell lung cancer (NSCLC) cells,  J. Pathol. 237:390-401, 2015. [LINK]

N.  Tunc-Skarka, S. Meier, T. Demirakca, M. Sack, W. Weber-Fahr, W. Brusniak, I. Wolf, F. Matthäus, T.G. Schulze, C. Diener, G. Ende, Effects of normal aging and SCN1A risk-gene expression on brain metabolites: evidence for an association between SCN1A and myo-inositol, NMR in Biomedicine 27(2), 228-234, 2014. [LINK]

T. Demirakca, W. Brusniak, N. Tunc-Skarka, I. Wolf, S. Meier, F. Matthäus, T.G. Schulze, G. Ende, C. Diener, Does body shaping influence brain shape? Habitual physical activity is linked to brain morphology independent of age. 2012, World Journal of Biological Psychiatry 15(5):387-396, 2014. [LINK]

C. Sellmann, L. Villarín Pildaín, A. Schmitt, F. Leonardi-Essmann, P. Durrenberger, R. Spanagel, T. Arzberger, H. Kretzschmar, M. Zink, O. Gruber, M. Herrera-Marschitz, R. Reynolds, P. Falkai, P.J. Gebicke-Haerter, F. Matthäus, Gene expression in superior temporal cortex of schizophrenia patients, European Archives of Psychiatry and Clinical Neuroscience 264(4):297-309, 2014. [LINK]

R. Spanagel, D. Durstewitz, A. Hansson, A. Heinz, F. Kiefer, G. Köhr, F. Matthäus, M.M. Nöthen, H.R. Noori, K. Obermayer, M. Rietschel, P. Schloss, H. Scholz, G. Schumann, M. Smolka, W. Sommer, V. Vengeliene, H. Walter, W. Wurst, U.S. Zimmermann, S. Stringer, Y. Smits, E.M. Derks, A systems medicine research approach for studying alcohol addiction, Addiction Biology 18(6):883 - 896, 2013. [LINK]

L. Villarín Pildaín, V. Vengeliene, F. Matthäus, New measurement criteria for studying alcohol drinking and relapse in rodents, In Silico Pharmacology 1:13,  2013. [LINK]

S. Schmitt, K. Safferling, K. Westphal, M. Hrabowski, U. Müller, P. Angel, L. Wiechert, V. Ehemann, B. Müller, S. Holland-Cunz, D. Stichel, N. Harder, K. Rohr, G. Germann, F. Matthäus, P. Schirmacher, N. Grabe, K. Breuhahn, Stathmin regulates keratinocyte proliferation and migration during cutaneous regeneration, PLoS One 8(9): e75075, 2013. [LINK]

P. J. Gebicke-Haerter, L. Villarín Pildaín, F. Matthäus, A. Schmitt, P. Falkai, Circadian rhythms investigated on the cellular and molecular levels, Pharmacopsychiatry 46 (Suppl. 1): S22–S29, 2013. [LINK]

S. Baez, E. Herrera,  L. Villarín Pildaín, D. Theil, M.L. Gonzalez-Gadea, P. Gomez, M. Mosquera, D. Huepe, S. Strejilevich, N.S. Vigliecca, F. Matthäus, J. Decety, F. Manes and A. Ibanez, Contextual social cognition impairments in schizophrenia and bipolar disorder, PLoS One 8(3): e57664, doi:10.1371/journal.pone.0057664, 2013. [LINK]

F. Matthäus, J.-P. Schmidt, A. Banerjee, T.G. Schulze, T. Demirakca, C. Diener, Effects of age on the structure of functional connectivity networks during episodic and working memory demand, Brain Connectivity 2(3), DOI: 10.1089/brain.2012.0077, 2012. [LINK]

S. Meier, T. Demirakca, W. Brusniak, I. Wolf, K. Liebsch, N. Tunc-Skarka, V. Nieratschker, S. Witt, F. Matthäus, G. Ende, H. Flor, M. Rietschel, C. Diener, T.G. Schulze, SCN1A alters brain structure and modulates age-dependent alterations in cortical activation during a working memory task, Biological Psychiatry 72(8):677-83, 2012.

F. Matthäus, M.S. Mommer, T. Curk, J. Dobnikar, On the origin and characteristics of noise-induced Lévy walks of E. coli, PLOS One 6(4):e18623, 2011. [LINK]

R. Spanagel, D. Bartsch, B. Brors, N. Dahmen, J. Deussing, R. Eils, G. Ende, J. Gallinat, P. Gebicke-Haerter, A. Heinz, F. Kiefer, W. Jäger, K. Mann, F. Matthäus, M. Nöthen, M. Rietschel, A. Sartorius, G. Schütz, W.H. Sommer, R. Sprengel, H. Walter, E. Wichmann, T. Wienker, W. Wurst, A. Zimmer, An integrated genome research network for studying the genetics of alcohol addiction, Addict. Biol. 15:369-379, 2010. [LINK]

F. Matthäus, V.A. Smith, A. Fogtman, W.H. Sommer, F. Leonardi-Essmann, A. Lourdusamy, M.A. Reimers, R. Spanagel, P.J. Gebicke-Haerter, Interactive molecular networks obtained by computer-aided conversion of microarray data from brains of alcohol-drinking rats, Pharmacopsychiatry 42(Suppl. 1): S118-S128, 2009. [LINK]

F. Matthäus, M. Jagodič, J. Dobnikar, E. coli superdiffusion and chemotaxis - search strategy, precision and motility, Biophysical Journal 97(4): 946-957, 2009. [LINK]

F. Matthäus, The spread of prion diseases in the brain - models of reaction and transport on networks, Journal of Biological Systems 17(4):623-641, 2009. [LINK]

F. Matthäus, C. Salazar, O. Ebenhöh, Biosynthetic potentials of metabolites and their hierarchical organization, PLOS Comp. Biol. 4(4): art. no. e1000049, 2008. [LINK]

F. Matthäus, C. Salazar, O. Ebenhöh, Compound clustering and consensus scopes of metabolic networks, InterJournal Complex Systems, Art. no. 1674, 2006. [LINK]

F. Matthäus, Diffusion versus network models as descriptions for the spread of prion diseases in the brain, J. theor. Biol. 240: 104-113, 2006. [LINK]

in I.I. Goryanin and A.B. Goryachev (eds.), Advances in Systems Biology, Advances in Experimental Medicine and Biology 736, 381-396, DOI 10.1007/978-1-4419-7210-1_22, Springer, 2012. [LINK]

in “Systems Biology And Psychiatry“ by F. Tretter, P.J. Gebicke-Haerter,  G. Winterer. E. Mendoza (Eds.), Wiley, 2010. [LINK]

Studies in Computational Intelligence 180:109-117, 2009.

in Managing complexity, reducing perplexity. Modeling biological systems, Eds. G. Ajmone-Marsan and M. Delitala, Springer, 2014. 

BMC Neurosci. 12(Suppl 1):P71, 2011. [LINK]

Proceedings of the Third Polish-Japanese Days "Approaches to Nonlinear Phenomena - Modeling, Analysis and Simulations", Chiba, Japan, 2004.

Proceedings of the Tenth National Conference on Applications of Mathematics in Biology and Medicine, Święty Krzyż, 2004.